pdb_extract

Welcome

pdb_extract is a pre-deposition service for preparing reusable metadata file and structure files in PDBx/mmCIF format for efficient deposition of multiple structures via wwPDB OneDep deposition

Run pdb_extract using this online service or by installing the standalone package on your local machine

How would you like to start pdb_extract?

Generate or edit a common metadata (e.g. author information) file that can be used across multiple related structures.

Directly upload and convert your structure file into a mmCIF file ready for OneDep deposition. Use this option if you have already prepared a metadata file, or want to skip metadata preparation.

Help on using pdb_extract

Reference: Huanwang Yang, Vladimir Guranovic, Shuchismita Dutta, Zukang Feng, Helen M. Berman and John D. Westbrook (2004), Acta Cryst. D60, 1833-18399
Questions, comments, and suggestions should be sent to deposit@deposit.rcsb.org
pdb_extract software version: frontend 1.1 ; backend 4.3.1