pdb_extract - Workstation Version

The pdb_extract Program Suite contains tools and examples for extracting mmCIF data from structure determination applications.

Reduce the human effort required to assemble complete and validated protein structure entries ready for wwPDB deposition.
Faster preparation of your mmCIF file for deposition.
Great for multiple structural depositions. The data template file can be re-used for each structure without re-entering the same information.

A pdb_extract manual is accessible via online detailing procedures concerning program installation and use.

Program Access

The source versions of pdb_extract is available for download.

pdb_extract has been integrated into CCP4 and the CCP4i interface(Version 5.0 and above). Users can run pdb_extract under the CCP4 environment.

Supported Applications

PHENIX, REFMAC, CNS/CNX/XPLOR, BUSTER
AIMLESS, HKL-2000, HKL-3000, XSCALE, XDS, SCALA, SCALEPACK, XIA2, DIALS, POINTLESS, d*TREK

System Requirements

Platforms: Linux, Mac
Disk space greater than 500MB for source distribution
Python (>3.6)
C/C++ compilers