PDB Extract

 

pdb_extract - Workstation Version

The pdb_extract Program Suite contains tools and examples for extracting mmCIF data from structure determination applications.

  • Reduce the human effort required to assemble complete and validated protein structure entries ready for wwPDB deposition.
  • Faster preparation of your mmCIF file for deposition.
  • Great for multiple structural depositions. The data template file can be re-used for each structure without re-entering the same information.

A pdb_extract manual is accessible via online detailing procedures concerning program installation and use.

Program Access

The source versions of pdb_extract is available for download.



pdb_extract has been integrated into CCP4 and the CCP4i interface(Version 5.0 and above). Users can run pdb_extract under the CCP4 environment.

Supported Applications
  • PHENIX, REFMAC, CNS/CNX/XPLOR, BUSTER
  • AIMLESS, HKL-2000, HKL-3000, XSCALE, XDS, SCALA, SCALEPACK, XIA2, DIALS, POINTLESS, d*TREK
System Requirements
  • Platforms: Linux, Mac
  • Disk space greater than 500MB for source distribution
  • Python (>3.6)
  • C/C++ compilers